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BioID papers

Below are Highlighted Papers.  ** indicates papers we highlight

Our oRIGINAL PAPER on THE USE OF BIRA FOR PROXIMITY PROTEOMICS in vivo in Brain:

**Science. 2016 Sept 9; 353(6304):1123-29. doi: 10.1126/science.aag0821. 
Identification of an Elaborate Complex Mediating Postsynaptic Inhibition.
Uezu A, Kanak DJ, Bradshaw TWA, Soderblom, EJ, Catavero, CM, Burette AC, Weinberg RJ, Soderling SH.

Paper describing the use of BirA for proximity proteomics:

**J Cell Biol. 2012 Mar 19;196(6):801-10. doi: 10.1083/jcb.201112098. Epub 2012 Mar 12.
A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells.
Roux KJ1, Kim DI, Raida M, Burke B.

Recent Research Papers utilizing BioID:


Sci Signal. 2016 Jun 14;9(432):rs4. doi: 10.1126/scisignal.aaf3572.
Proximity biotinylation provides insight into the molecular composition of focal adhesions at the nanometer scale.
Dong JM1, Tay FP1, Swa HL2, Gunaratne J3, Leung T1, Burke B4, Manser E5.


PLoS One. 2016 Mar 2;11(3):e0150239. doi: 10.1371/journal.pone.0150239. eCollection 2016.
Identification of Interactions in the NMD Complex Using Proximity-Dependent Biotinylation (BioID).
Schweingruber C1,2, Soffientini P3, Ruepp MD1, Bachi A3, Mühlemann O1.

**Cell. 2015 Dec 3;163(6):1484-99. doi: 10.1016/j.cell.2015.10.065.
A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface.
Gupta GD1, Coyaud É2, Gonçalves J1, Mojarad BA3, Liu Y3, Wu Q3, Gheiratmand L1, Comartin D3, Tkach JM1, Cheung SW1, Bashkurov M1, Hasegan M1, Knight JD1, Lin ZY1, Schueler M4, Hildebrandt F4, Moffat J5, Gingras AC3, Raught B6, Pelletier L7.


Mol Cell Proteomics. 2015 Jul;14(7):1781-95. doi: 10.1074/mcp.M114.045658. Epub 2015 Apr 21.
BioID-based Identification of Skp Cullin F-box (SCF)β-TrCP1/2 E3 Ligase Substrates.
Coyaud E1, Mis M2, Laurent EM1, Dunham WH3, Couzens AL3, Robitaille M2, Gingras AC4, Angers S5, Raught B6.

PLoS One. 2015 Mar 19;10(3):e0117074. doi: 10.1371/journal.pone.0117074. eCollection 2015.
Proteomic analysis of proteins surrounding occludin and claudin-4 reveals their proximity to signaling and trafficking networks.
Fredriksson K1, Van Itallie CM1, Aponte A2, Gucek M2, Tietgens AJ1, Anderson JM1.


J Proteomics. 2015 Apr 6;118:95-111. doi: 10.1016/j.jprot.2014.09.029. Epub 2014 Oct 18.
BioID identifies novel c-MYC interacting partners in cultured cells and xenograft tumors.
Dingar D1, Kalkat M1, Chan PK1, Srikumar T1, Bailey SD1, Tu WB1, Coyaud E1, Ponzielli R1, Kolyar M1, Jurisica I1, Huang A2, Lupien M1, Penn LZ3, Raught B4.


**J Proteomics. 2015 Apr 6;118:81-94. doi: 10.1016/j.jprot.2014.09.011. Epub 2014 Oct 2.
Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes.
Lambert JP1, Tucholska M1, Go C2, Knight JD1, Gingras AC3.


Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):E2453-61. doi: 10.1073/pnas.1406459111. Epub 2014 Jun 3.
Probing nuclear pore complex architecture with proximity-dependent biotinylation.
Kim DI1, Birendra KC1, Zhu W2, Motamedchaboki K2, Doye V3, Roux KJ4.


Curr Biol. 2014 Mar 17;24(6):664-70. doi: 10.1016/j.cub.2014.01.067. Epub 2014 Mar 6.
Proximity interactions among centrosome components identify regulators of centriole duplication.
Firat-Karalar EN1, Rauniyar N2, Yates JR 3rd2, Stearns T3.

 

Review articles and Methods papers of BioID:


Proteomics. 2016 Jun 22. doi: 10.1002/pmic.201600123. [Epub ahead of print]
Meet the neighbors: Mapping local protein interactomes by proximity-dependent labeling with BioID.
Varnaitė R1, MacNeill SA1.


F1000Res. 2016 Apr 29;5. pii: F1000 Faculty Rev-782. doi: 10.12688/f1000research.7629.1. eCollection 2016.
Recent advances in large-scale protein interactome mapping.
Mehta V1, Trinkle-Mulcahy L1.


Methods Mol Biol. 2016;1411:133-46. doi: 10.1007/978-1-4939-3530-7_8.
Identifying Protein-Protein Associations at the Nuclear Envelope with BioID.
Kim DI1, Jensen SC1, Roux KJ2,3.


Methods Enzymol. 2016;569:3-22. doi: 10.1016/bs.mie.2015.08.008. Epub 2015 Sep 26.
BioID Identification of Lamin-Associated Proteins.
Mehus AA1, Anderson RH1, Roux KJ2.


Curr Protoc Protein Sci. 2013 Nov 5;74:Unit 19.23.. doi: 10.1002/0471140864.ps1923s74.
BioID: a screen for protein-protein interactions.
Roux KJ1, Kim DI, Burke B.